89 publications
2020
- Kaplanis, N. J., Harris, J. L., & Smith, J. E. (2020). A cross-genus comparison of grazing pressure by two native marine herbivores on native, non-native naturalized, and non-native invasiveSargassummacroalgae. Helgoland Marine Research, 74(1). doi: 10.1186/s10152-020-00541-w
- Thapa, H. R., Lin, Z. J., Yi, D. Q., Smith, J. E., Schmidt, E. W., & Agarwal, V. (2020). Genetic and biochemical reconstitution of bromoform biosynthesis in asparagopsis lends insights into seaweed reactive oxygen species enzymology. Acs Chemical Biology, 15(6), 1662-1670. doi: 10.1021/acschembio.0c00299
- Kaplanis, N. J., Edwards, C. B., Eynaud, Y., & Smith, J. E. (2020). Future sea-level rise drives rocky intertidal habitat loss and benthic community change. Peerj, 8(e9186). doi: 10.7717/peerj.9186
- Johnson, M. D., Fox, M. D., Kelly, E. L. A., Zgliczynski, B. J., Sandin, S. A., & Smith, J. E. (2020). Ecophysiology of coral reef primary producers across an upwelling gradient in the tropical central Pacific. PLOS ONE, 15(2), e0228448. doi: 10.1371/journal.pone.0228448
- Kelly, E. L. A., Cannon, A. L., & Smith, J. E. (2020). Environmental impacts and implications of tropical carrageenophyte seaweed farming. Conservation Biology. doi: 10.1111/cobi.13462
2019
- Carter, A. L., Edwards, C. B., Fox, M. D., Amir, C. G., Eynaud, Y., Johnson, M. D., ... Smith, J. E. (2019). Changes in benthic community composition associated with the outbreak of the corallimorph, Rhodactis howesii, at Palmyra Atoll. Coral Reefs, 38(6), 1267-1279. doi: 10.1007/s00338-019-01841-5
- Cyronak, T., Takeshita, Y., Courtney, T. A., DeCarlo, E. H., Eyre, B. D., Kline, D. I., ... Andersson, A. J. (2019). Diel temperature and pH variability scale with depth across diverse coral reef habitats. Limnology and Oceanography Letters. doi: 10.1002/lol2.10129
- Pedersen, N. E., Edwards, C. B., Eynaud, Y., Gleason, A. C. R., Smith, J. E., & Sandin, S. A. (2019). The influence of habitat and adults on the spatial distribution of juvenile corals. Ecography. doi: 10.1111/ecog.04520
- Darling, E. S., McClanahan, T. R., Maina, J., Gurney, G. G., Graham, N. A. J., Januchowski-Hartley, F., ... Mouillot, D. (2019). Social-environmental drivers inform strategic management of coral reefs in the Anthropocene. Nature Ecology & Evolution, 3(9), 1341-1350. doi: 10.1038/s41559-019-0953-8
- Lewis, L. S., & Smith, J. E. (2019). Functional diversity among herbivorous sea urchins on a coral reef: grazing rate, dietary preference, and metabolism. Marine Ecology Progress Series, 625, 71-87. doi: 10.3354/meps13038
- Fox, M. D., Carter, A. L., Edwards, C. B., Takeshita, Y., Johnson, M. D., Petrovic, V., ... Smith, J. E. (2019). Limited coral mortality following acute thermal stress and widespread bleaching on Palmyra Atoll, central Pacific. Coral Reefs, 38(4), 701-712. doi: 10.1007/s00338-019-01796-7
- Kelly, L. W., Nelson, C. E., Haas, A. F., Naliboff, D. S., Calhoun, S., Carlson, C. A., ... Rohwer, F. (2019). Diel population and functional synchrony of microbial communities on coral reefs. Nature Communications, 10(1691). doi: 10.1038/s41467-019-09419-z
2018
- Fox, M. D., Williams, G. J., Johnson, M. D., Radice, V. Z., Zgliczynski, B. J., Kelly, E. L. A., ... Smith, J. E. (2018). Gradients in primary production predict trophic strategies of mixotrophic corals across spatial scales. Current Biology, 28(21), 3355-+. doi: 10.1016/j.cub.2018.08.057
- d'Auriac, I. G., Quinn, R. A., Maughan, H., Nothias, L. F., Little, M., Kapono, C. A., ... Hartmann, A. C. (2018). Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism. Proceedings of the Royal Society B-Biological Sciences, 285(2884). doi: 10.1098/rspb.2018.1307
- Nakajima, R., Haas, A. F., Silveira, C. B., Kelly, E. L. A., Smith, J. E., Sandin, S., ... Kurihara, H. (2018). Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. Journal of Experimental Marine Biology and Ecology, 504, 53-60. doi: 10.1016/j.jembe.2018.02.008
- Williams, G. J., Sandin, S. A., Zgliczynski, B. J., Fox, M. D., Gove, J. M., Rogers, J. S., ... Smith, J. E. (2018). Biophysical drivers of coral trophic depth zonation. Marine Biology, 165(4). doi: 10.1007/s00227-018-3314-2
- Lewis, L. S., Smith, J. E., & Eynaud, Y. (2018). Comparative metabolic ecology of tropical herbivorous echinoids on a coral reef. Plos One, 13(1). doi: 10.1371/journal.pone.0190470
- Ruttenberg, B., Caselle, J. E., Estep, A. J., Johnson, A. E., Marhaver, K. L., Richter, L. J., ... Cannon, A. (2018). Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management. Plos One, 13(1). doi: 10.1371/journal.pone.0189355
2017
- Edwards, C. B., Eynaud, Y., Williams, G. J., Pedersen, N. E., Zgliczynski, B. J., Gleason, A. C. R., ... Sandin, S. A. (2017). Large-area imaging reveals biologically driven non-random spatial patterns of corals at a remote reef. Coral Reefs, 36(4), 1291-1305. doi: 10.1007/s00338-017-1624-3
- Johnson, M. D., Comeau, S., Lantz, C. A., & Smith, J. E. (2017). Complex and interactive effects of ocean acidification and temperature on epilithic and endolithic coral-reef turf algal assemblages. Coral Reefs, 36(4), 1059-1070. doi: 10.1007/s00338-017-1597-2
- Kersten, R. D., Lee, S., Fujita, D., Pluskal, T., Kram, S., Smith, J. E., ... Weng, J. K. (2017). A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-Scale NMR-Coupled Crystalline Sponge X-ray Diffraction Analysis. Journal of the American Chemical Society, 139(46), 16838-16844. doi: 10.1021/jacs.7b09452
- Kelly, E. L. A., Eynaud, Y., Williams, I. D., Sparks, R. T., Dailer, M. L., Sandin, S. A., & Smith, J. E. (2017). A budget of algal production and consumption by herbivorous fish in an herbivore fisheries management area, Maui, Hawaii. Ecosphere, 8(8). doi: 10.1002/ecs2.1899
- Nakajima, R., Yamazaki, H., Lewis, L. S., Khen, A., Smith, J. E., Nakatomi, N., & Kurihara, H. (2017). Planktonic trophic structure in a coral reef ecosystem - Grazing versus microbial food webs and the production of mesozooplankton. Progress in Oceanography, 156, 104-120. doi: 10.1016/j.pocean.2017.06.007
- Furby, K. A., Smith, J. E., & Sandin, S. A. (2017). Porites superfusa mortality and recovery from a bleaching event at Palmyra Atoll USA. Peerj, 5(e3204). doi: 10.7717/peerj.3204
- McLaughlin, K., Dickson, A., Weisberg, S. B., Coale, K., Elrod, V., Hunter, C., ... Weis, K. R. (2017). An evaluation of ISFET sensors for coastal pH monitoring applications. Regional Studies in Marine Science, 12, 11-18. doi: 10.1016/j.rsma.2017.02.008
2016
- Kelly, E. L. A., Eynaud, Y., Clements, S. M., Gleason, M., Sparks, R. T., Williams, I. D., & Smith, J. E. (2016). Investigating functional redundancy versus complementarity in Hawaiian herbivorous coral reef fishes. Oecologia, 182(4), 1151-1163. doi: 10.1007/s00442-016-3724-0
- Takeshita, Y., McGillis, W., Briggs, E. M., Carter, A. L., Donham, E. M., Martz, T. R., ... Smith, J. E. (2016). Assessment of net community production and calcification of a coral reef using a boundary layer approach. Journal of Geophysical Research-Oceans, 121(8), 5655-5671. doi: 10.1002/2016jc011886
- Mullen, A. D., Treibitz, T., Roberts, P. L. D., Kelly, E. L. A., Horwitz, R., Smith, J. E., & Jaffe, J. S. (2016). Underwater microscopy for in situ studies of benthic ecosystems. Nature Communications, 7. doi: 10.1038/ncomms12093
- Haas, A. F., Fairoz, M. F. M., Kelly, L. W., Nelson, C. E., Dinsdale, E. A., Edwards, R. A., ... Rohwer, F. (2016). Global microbialization of coral reefs. Nature Microbiology, 1(6). doi: 10.1038/nmicrobiol.2016.42
- Kaplanis, N. J., Harris, J. L., & Smith, J. E. (2016). Distribution patterns of the non-native seaweeds Sargassum horneri (Turner) C. Agardh and Undaria pinnatifida (Harvey) Suringar on the San Diego and Pacific coast of North America. Aquatic Invasions, 11(2), 111-124. doi: 10.3391/ai.2016.11.2.01
- Quinn, R. A., Vermeij, M. J. A., Hartmann, A. C., d'Auriac, I. G., Benler, S., Haas, A., ... Rohwer, F. (2016). Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence. Proceedings of the Royal Society B-Biological Sciences, 283(1829). doi: 10.1098/rspb.2016.0469
- Knowles, B., Silveira, C. B., Bailey, B. A., Barott, K., Cantu, V. A., Cobian-Guemes, A. G., ... Rohwer, F. (2016). Lytic to temperate switching of viral communities. Nature, 531(7595), 466-+. doi: 10.1038/nature17193
- Smith, J. E., Brainard, R., Carter, A., Grillo, S., Edwards, C., Harris, J., ... Sandin, S. (2016). Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific. Proceedings of the Royal Society B-Biological Sciences, 283(1822). doi: 10.1098/rspb.2015.1985
2015
- Vargas-Angel, B., Richards, C. L., Vroom, P. S., Price, N. N., Schils, T., Young, C. W., ... Brainard, R. E. (2015). Baseline assessment of net calcium carbonate accretion rates on US Pacific reefs. Plos One, 10(12). doi: 10.1371/journal.pone.0142196
- Haas, A. F., Guibert, M., Foerschner, A., Co, T., Calhoun, S., George, E., ... Rohwer, F. (2015). Can we measure beauty? Computational evaluation of coral reef aesthetics. Peerj, 3(e1390). doi: 10.7717/peerj.1390
- Takeshita, Y., Frieder, C. A., Martz, T. R., Ballard, J. R., Feely, R. A., Kram, S., ... Smith, J. E. (2015). Including high-frequency variability in coastal ocean acidification projections. Biogeosciences, 12(19), 5853-5870. doi: 10.5194/bg-12-5853-2015
- Harris, J. L., Lewis, L. S., & Smith, J. E. (2015). Quantifying scales of spatial variability in algal turf assemblages on coral reefs. Marine Ecology Progress Series, 532, 41-57. doi: 10.3354/meps11344
- Beijbom, O., Edmunds, P. J., Roelfsema, C., Smith, J., Kline, D. I., Neal, B. P., ... Kriegman, D. (2015). Towards automated annotation of benthic survey images: Variability of human experts and operational modes of automation. Plos One, 10(7). doi: 10.1371/journal.pone.0130312
- Bracken, M. E. S., Hillebrand, H., Borer, E. T., Seabloom, E. W., Cebrian, J., Cleland, E. E., ... Smith, J. E. (2015). Signatures of nutrient limitation and co-limitation: responses of autotroph internal nutrient concentrations to nitrogen and phosphorus additions. Oikos, 124(2), 113-121. doi: 10.1111/oik.01215
2014
- Lim, Y. W., Cuevas, D. A., Silva, G. G. Z., Aguinaldo, K., Dinsdale, E. A., Haas, A. F., ... Edwards, R. A. (2014). Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. Peerj, 2(e520). doi: 10.7717/peerj.520
- Kelly, L. W., Williams, G. J., Barott, K. L., Carlson, C. A., Dinsdale, E. A., Edwards, R. A., ... Rohwer, F. (2014). Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences of the United States of America, 111(28), 10227-10232. doi: 10.1073/pnas.1403319111
- Johnson, M. D., Price, N. N., & Smith, J. E. (2014). Contrasting effects of ocean acidification on tropical fleshy and calcareous algae. Peerj, 2(e411). doi: 10.7717/peerj.411
- Williams, G. J., Price, N. N., Ushijima, B., Aeby, G. S., Callahan, S., Davy, S. K., ... Work, T. M. (2014). Ocean warming and acidification have complex interactive effects on the dynamics of a marine fungal disease. Proceedings of the Royal Society B-Biological Sciences, 281(1778). doi: 10.1098/rspb.2013.3069
- Hamilton, S. L., Smith, J. E., Price, N. N., & Sandin, S. A. (2014). Quantifying patterns of fish herbivory on Palmyra Atoll (USA), an uninhabited predator-dominated central Pacific coral reef. Marine Ecology Progress Series, 501, 141-155. doi: 10.3354/meps10684
- Edwards, C. B., Friedlander, A. M., Green, A. G., Hardt, M. J., Sala, E., Sweatman, H. P., ... Smith, J. E. (2014). Global assessment of the status of coral reef herbivorous fishes: evidence for fishing effects. Proceedings of the Royal Society B-Biological Sciences, 281(1774). doi: 10.1098/rspb.2013.1835
2013
- Smith, J. E., Price, N. N., Nelson, C. E., & Haas, A. F. (2013). Coupled changes in oxygen concentration and pH caused by metabolism of benthic coral reef organisms. Marine Biology, 160(9), 2437-2447. doi: 10.1007/s00227-013-2239-z
- Nelson, C. E., Goldberg, S. J., Kelly, L. W., Haas, A. F., Smith, J. E., Rohwer, F., & Carlson, C. A. (2013). Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. Isme Journal, 7(5), 962-979. doi: 10.1038/ismej.2012.161
- Vermeij, M. J. A., van der Heijden, R. A., Olthuis, J. G., Marhaver, K. L., Smith, J. E., & Visser, P. M. (2013). Survival and dispersal of turf algae and macroalgae consumed by herbivorous coral reef fishes. Oecologia, 171(2), 417-425. doi: 10.1007/s00442-012-2436-3
- McLeod, E., Anthony, K. R. N., Andersson, A., Beeden, R., Golbuu, Y., Kleypas, J., ... Smith, J. E. (2013). Preparing to manage coral reefs for ocean acidification: lessons from coral bleaching. Frontiers in Ecology and the Environment, 11(1), 20-27. doi: 10.1890/110240
2012
- Price, N. N., Martz, T. R., Brainard, R. E., & Smith, J. E. (2012). Diel Variability in Seawater pH Relates to Calcification and Benthic Community Structure on Coral Reefs. Plos One, 7(8). doi: 10.1371/journal.pone.0043843
- Dailer, M. L., Smith, J. E., & Smith, C. M. (2012). Responses of bloom forming and non-bloom forming macroalgae to nutrient enrichment in Hawai'i, USA. Harmful Algae, 17, 111-125. doi: 10.1016/j.hal.2012.03.008
- Choi, H., Mascuch, S. J., Villa, F. A., Byrum, T., Teasdale, M. E., Smith, J. E., ... Gerwick, W. H. (2012). Honaucins A-C, potent inhibitors of inflammation and bacterial quorum sensing: synthetic derivatives and structure-activity relationships. Chemistry & Biology, 19(5), 589-598. doi: 10.1016/j.chembiol.2012.03.014
- Barott, K. L., Rodriguez-Mueller, B., Youle, M., Marhaver, K. L., Vermeij, M. J. A., Smith, J. E., & Rohwer, F. L. (2012). Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae. Proceedings of the Royal Society B-Biological Sciences, 279(1733), 1655-1664. doi: 10.1098/rspb.2011.2155
- Kelly, L. W., Barott, K. L., Dinsdale, E., Friedlander, A. M., Nosrat, B., Obura, D., ... Rohwer, F. (2012). Black reefs: iron-induced phase shifts on coral reefs. ISME Journal, 6(3), 638-649. doi: 10.1038/ismej.2011.114
- Freeman, L. A., Miller, A. J., Norris, R. D., & Smith, J. E. (2012). Classification of remote Pacific coral reefs by physical oceanographic environment. Journal of Geophysical Research-Oceans, 117(C02007). doi: 10.1029/2011jc007099
- Barott, K. L., Williams, G. J., Vermeij, M. J. A., Harris, J., Smith, J. E., Rohwer, F. L., & Sandin, S. A. (2012). Natural history of coral-algae competition across a gradient of human activity in the Line Islands. Marine Ecology-Progress Series, 460, 1-12. doi: 10.3354/meps09874
2011
- Haas, A. F., Nelson, C. E., Kelly, L. W., Carlson, C. A., Rohwer, F., Leichter, J. J., ... Smith, J. E. (2011). Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity. Plos One, 6(11). doi: 10.1371/journal.pone.0027973
- Harpole, W. S., Ngai, J. T., Cleland, E. E., Seabloom, E. W., Borer, E. T., Bracken, M. E. S., ... Smith, J. E. (2011). Nutrient co-limitation of primary producer communities. Ecology Letters, 14(9), 852-862. doi: 10.1111/j.1461-0248.2011.01651.x
- Barott, K. L., Rodriguez-Brito, B., Janouskovec, J., Marhaver, K. L., Smith, J. E., Keeling, P., & Rohwer, F. L. (2011). Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environmental Microbiology, 13(5), 1192-1204. doi: 10.1111/j.1462-2920.2010.02419.x
- Price, N. N., Hamilton, S. L., Tootell, J. S., & Smith, J. E. (2011). Species-specific consequences of ocean acidification for the calcareous tropical green algae Halimeda. Marine Ecology-Progress Series, 440, 67-78. doi: 10.3354/meps09309
- Knapp, I. S., Godwin, L. S., Smith, J. E., Williams, C. J., & Bell, J. J. (2011). Records of non-indigenous marine species at Palmyra Atoll in the US Line Islands. Marine Biodiversity Records, 4, 1-7. doi: 10.1017/S1755267211000078
2010
- McCauley, D. J., Micheli, F., Young, H. S., Tittensor, D. P., Brumbaugh, D. R., Madin, E. M. P., ... Worm, B. (2010). Acute effects of removing large fish from a near-pristine coral reef. Marine Biology, 157(12), 2739-2750. doi: 10.1007/s00227-010-1533-2
- Carilli, J. E., Godfrey, J., Norris, R. D., Sandin, S. A., & Smith, J. E. (2010). Periodic endolithic algal blooms in Montastraea faveolata corals may represent periods of low-level stress. Bulletin of Marine Science, 86(3), 709-718.
- Smith, J. E., Hunter, C. L., & Smith, C. M. (2010). The effects of top-down versus bottom-up control on benthic coral reef community structure. Oecologia, 163(2), 497-507. doi: 10.1007/s00442-009-1546-z
- Dailer, M. L., Knox, R. S., Smith, J. E., Napier, M., & Smith, C. M. (2010). Using δ15N values in algal tissue to map locations and potential sources of anthropogenic nutrient inputs on the island of Maui, Hawai‘i, USA. Marine Pollution Bulletin, 60(5), 655-671. doi: 10.1016/j.marpolbul.2009.12.021
- Salomon, A. K., Gaichas, S. K., Shears, N. T., Smith, J. E., Madin, E. M. P., & Gaines, S. D. (2010). Key Features and Context-Dependence of Fishery-Induced Trophic Cascades. Conservation Biology, 24(2), 382-394. doi: 10.1111/j.1523-1739.2009.01436.x
- Choi, H., Engene, N., Smith, J. E., Preskitt, L. B., & Gerwick, W. H. (2010). Crossbyanols A-D, toxic brominated polyphenyl ethers from the hawai'ian bloom-forming cyanobacterium Leptolyngbya crossbyana. Journal of Natural Products, 73(4), 517-522. doi: 10.1021/np900661g
- Barott, K. L., Caselle, J. E., Dinsdale, E. A., Friedlander, A. M., Maragos, J. E., Obura, D., ... Zgliczynski, B. (2010). The Lagoon at Caroline/Millennium Atoll, Republic of Kiribati: Natural History of a Nearly Pristine Ecosystem. Plos One.(e10950). doi: 10.1371/journal.pone.0010950
2009
- Barott, K., Smith, J., Dinsdale, E., Hatay, M., Sandin, S., & Rohwer, F. (2009). Hyperspectral and Physiological Analyses of Coral-Algal Interactions. Plos One, 4(11). doi: 10.1371/journal.pone.0008043
- Hillebrand, H., Borer, E. T., Bracken, M. E. S., Cardinale, B. J., Cebrian, J., Cleland, E. E., ... Smith, M. D. (2009). Herbivore metabolism and stoichiometry each constrain herbivory at different organizational scales across ecosystems. Ecology Letters, 12(6), 516-527. doi: 10.1111/j.1461-0248.2009.01304.x
- Vermeij, M. J. A., Smith, J. E., Smith, C. M., Thurber, R. V., & Sandin, S. A. (2009). Survival and settlement success of coral planulae: independent and synergistic effects of macroalgae and microbes. Oecologia, 159(2), 325-336. doi: 10.1007/s00442-008-1223-7
2008
- Smith, J. E., Kuwabara, J., Coney, J., Flanagan, K., Beets, J., Brown, D., ... Turner, J. (2008). An unusual cyanobacterial bloom in Hawai'i. Coral Reefs, 27(4), 851-851. doi: 10.1007/s00338-008-0417-0
- Gruner, D. S., Smith, J. E., Seabloom, E. W., Sandin, S. A., Ngai, J. T., Hillebrand, H., ... Bolker, B. M. (2008). A cross-system synthesis of consumer and nutrient resource control on producer biomass. Ecology Letters, 11(7), 740-755. doi: 10.1111/j.1461-0248.2008.01192.x
- Sandin, S. A., Smith, J. E., DeMartini, E. E., Dinsdale, E. A., Donner, S. D., Friedlander, A. M., ... Sala, E. (2008). Baselines and Degradation of Coral Reefs in the Northern Line Islands. Plos One, 3(2). doi: 10.1371/journal.pone.0001548
2007
- Elser, J. J., Bracken, M. E. S., Cleland, E. E., Gruner, D. S., Harpole, W. S., Hillebrand, H., ... Smith, J. E. (2007). Global analysis of nitrogen and phosphorus limitation of primary producers in freshwater, marine and terrestrial ecosystems. Ecology Letters, 10(12), 1135-1142. doi: 10.1111/j.1461-0248.2007.01113.x
- Williams, S. L., & Smith, J. E. (2007). A Global Review of the Distribution, Taxonomy, and Impacts of Introduced Seaweeds. Annual Review of Ecology, Evolution, and Systematics, 38(1), 327-359. doi: 10.1146/annurev.ecolsys.38.091206.095543
- Hillebrand, H., Gruner, D. S., Borer, E. T., Bracken, M. E. S., Cleland, E. E., Elser, J. J., ... Smith, J. E. (2007). Consumer versus resource control of producer diversity depends on ecosystem type and producer community structure. Proceedings of the National Academy of Sciences of the United States of America, 104(26), 10904-10909. doi: 10.1073/pnas.0701918104
2006
- Zuccarello, G. C., Critchley, A. T., Smith, J., Sieber, V., Lhonneur, G. B., & West, J. A. (2006). Systematics and genetic variation in commercial Kappaphycus and Eucheuma (Solieriaceae, Rhodophyta). Journal of Applied Phycology, 18(3-5), 643-651. doi: 10.1007/s10811-006-9066-2
- Schaffelke, B., Smith, J. E., & Hewitt, C. L. (2006). Introduced macroalgae - a growing concern. Journal of Applied Phycology, 18(3-5), 529-541. doi: 10.1007/s10811-006-9074-2
- Smith, J. E., Shaw, M., Edwards, R. A., Obura, D., Pantos, O., Sala, E., ... Rohwer, F. L. (2006). Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality. Ecology Letters, 9(7), 835-845. doi: 10.1111/j.1461-0248.2006.00937.x
2005
- Conklin, E. J., & Smith, J. E. (2005). Abundance and spread of the invasive red algae, Kappaphycus spp., in Kane'ohe Bay, Hawai'i and an experimental assessment of management options. Biological Invasions, 7(6), 1029-1039. doi: 10.1007/s10530-004-3125-x
- Smith, J. E., Runcie, J. W., & Smith, C. M. (2005). Characterization of a large-scale ephemeral bloom of the green alga Cladophora sericea on the coral reefs of West Maui, Hawai'i. Marine Ecology-Progress Series, 302, 77-91. doi: 10.3354/meps302077
2004
- Smith, J. E., Smith, C. M., Vroom, P. S., Beach, K. L., & Miller, S. (2004). Nutrient and growth dynamics of Halimeda tuna on Conch Reef, Florida Keys: Possible influence of internal tides on nutrient status and physiology. Limnology and Oceanography, 49(6), 1923-1936.
- Smith, J. E., Hunter, C. L., Conklin, E. J., Most, R., Sauvage, T., Squair, C., & Smith, C. M. (2004). Ecology of the Invasive Red Alga Gracilaria salicornia (Rhodophyta) on O'ahu, Hawai'i. Pacific Science, 58(2), 325-343.
2003
- Runcie, J. W., & Smith, J. E. (2003). Special issue: nutrient dynamics in coastal ecosystems - linking physical and biological processes - Preface. Journal of Marine Systems, 42(3-4), 81-82. doi: 10.1016/s0924-7963(03)00067-8
- Vroom, P. S., Smith, C. M., Coyer, J. A., Walters, L. J., Hunter, C. L., Beach, K. S., & Smith, J. E. (2003). Field biology of Halimeda tuna (Bryopsidales, Chlorophyta) across a depth gradient: comparative growth, survivorship, recruitment, and reproduction. Hydrobiologia, 501(1-3), 149-166. doi: 10.1023/a:1026287816324
2002
- Smith, J. E., Hunter, C. L., & Smith, C. M. (2002). Distribution and reproductive characteristics of nonindigenous and invasive marine alage in the Hawaiian Islands. Pacific Science, 56(3), 299-315.
2001
- Smith, J. E., Smith, C. M., & Hunter, C. L. (2001). An experimental analysis of the effects of herbivory and nutrient enrichment on benthic community dynamics on a Hawaiian reef. Coral Reefs, 19(4), 332-342.
- Vroom, P. S., Smith, J. E., & Smith, C. M. (2001). Observations of reproduction in Rhipidosiphon javensis (Halimedineae, Bryopsidales) in Hawaii. Phycologia, 40(1), 97-100. doi: 10.2216/i0031-8884-40-1-97.1