Donham, E. M., Hamilton, S. L., Aiello, I., Price, N. N., & Smith, J. E. (2022). Consequences of warming and acidification for the temperate articulated coralline alga, Calliarthron tuberculosum (Florideophyceae, Rhodophyta). Journal of Phycology, jpy.13272.
Khen, A., Johnson, M. D., Fox, M. D., Clements, S. M., Carter, A. L., & Smith, J. E. (2022). Decadal stability of coral reef benthic communities on Palmyra Atoll, central Pacific, through two bleaching events. Coral Reefs.
Sandin, S. A., Alcantar, E., Clark, R., De Leon, R., Dilrosun, F., Edwards, C. B., Estep, A. J., Eynaud, Y., French, B. J., Fox, M. D., Grenda, D., Hamilton, S. L., Kramp, H., Marhaver, K. L., Miller, S. D., Roach, T. N. F., Seferina, G., Silveira, C. B., Smith, J. E., … Vermeij, M. J. A. (2022). Benthic assemblages are more predictable than fish assemblages at an island scale. Coral Reefs.
Johnson, M. D., Price, N. N., & Smith, J. E. (2022). Calcification accretion units (CAUs): A standardized approach for quantifying recruitment and calcium carbonate accretion in marine habitats. Methods in Ecology and Evolution, 11.
Leliaert, F., Kelly, E. L. A., Janouskovec, J., Fox, M. D., Johnson, M. D., Redfern, F. M., Eria, T., Haas, A. F., Sala, E., Sandin, S. A., & Smith, J. E. (2022). Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean. Journal of Phycology, 15.
Fox, M. D., Cohen, A. L., Rotjan, R. D., Mangubhai, S., Sandin, S. A., Smith, J. E., Thorrold, S. R., Dissly, L., Mollica, N. R., & Obura, D. (2021). Increasing coral reef resilience through successive marine heatwaves. Geophysical Research Letters, 48(17), 11.
Martin, N., Bernat, T., Dinasquet, J., Stofko, A., Damon, A., Deheyn, D. D., Azam, F., Smith, J. E., Davey, M. P., Smith, A. G., Vignolini, S., & Wangpraseurt, D. (2021). Synthetic algal-bacteria consortia for space-efficient microalgal growth in a simple hydrogel system. Journal of Applied Phycology.
Donham, E. M., Hamilton, S. L., Price, N. N., Kram, S., Kelly, E., Johnson, M. D., Neu, A. T., & Smith, J. (2021). Experimental assessment of the impacts of ocean acidification and urchin grazing on benthic kelp forest assemblages. Journal of Experimental Marine Biology and Ecology, 540, 11.
Fox, M. D., Nelson, C. E., Oliver, T. A., Quinlan, Z. A., Remple, K., Glanz, J., Smith, J. E., & Putnam, H. M. (2021). Differential resistance and acclimation of two coral species to chronic nutrient enrichment reflect life-history traits. Functional Ecology.
Tran, L. A. T., Bafort, Q., Steen, F., Garreta, A. G., D’Hondt, S., Miller, K. A., Vranken, S., Zuljevic, A., Smith, J. E., & De Clerck, O. (2020). Dictyota cyanoloma (Dictyotales, Phaeophyceae), a Newly Introduced Brown Algal Species in California(1). Journal of Phycology.
Kaplanis, N. J., Harris, J. L., & Smith, J. E. (2020). A cross-genus comparison of grazing pressure by two native marine herbivores on native, non-native naturalized, and non-native invasiveSargassummacroalgae. Helgoland Marine Research, 74(1).
Thapa, H. R., Lin, Z. J., Yi, D. Q., Smith, J. E., Schmidt, E. W., & Agarwal, V. (2020). Genetic and biochemical reconstitution of bromoform biosynthesis in asparagopsis lends insights into seaweed reactive oxygen species enzymology. Acs Chemical Biology, 15(6), 1662–1670.
Kaplanis, N. J., Edwards, C. B., Eynaud, Y., & Smith, J. E. (2020). Future sea-level rise drives rocky intertidal habitat loss and benthic community change. PeerJ, 8.
Johnson, M. D., Fox, M. D., Kelly, E. L. A., Zgliczynski, B. J., Sandin, S. A., & Smith, J. E. (2020). Ecophysiology of coral reef primary producers across an upwelling gradient in the tropical central Pacific. PLOS ONE, 15(2), e0228448.
Kelly, E. L. A., Cannon, A. L., & Smith, J. E. (2020). Environmental impacts and implications of tropical carrageenophyte seaweed farming. Conservation Biology.
Cyronak, T., Takeshita, Y., Courtney, T. A., DeCarlo, E. H., Eyre, B. D., Kline, D. I., Martz, T., Page, H., Price, N. N., Smith, J., Stoltenberg, L., Tresguerres, M., & Andersson, A. J. (2019). Diel temperature and pH variability scale with depth across diverse coral reef habitats. Limnology and Oceanography Letters.
Carter, A. L., Edwards, C. B., Fox, M. D., Amir, C. G., Eynaud, Y., Johnson, M. D., Lewis, L. S., Sandin, S. A., & Smith, J. E. (2019). Changes in benthic community composition associated with the outbreak of the corallimorph, Rhodactis howesii, at Palmyra Atoll. Coral Reefs, 38(6), 1267–1279.
Pedersen, N. E., Edwards, C. B., Eynaud, Y., Gleason, A. C. R., Smith, J. E., & Sandin, S. A. (2019). The influence of habitat and adults on the spatial distribution of juvenile corals. Ecography.
Darling, E. S., McClanahan, T. R., Maina, J., Gurney, G. G., Graham, N. A. J., Januchowski-Hartley, F., Cinner, J. E., Mora, C., Hicks, C. C., Maire, E., Puotinen, M., Skirving, W. J., Adjeroud, M., Ahmadia, G., Arthur, R., Bauman, A. G., Beger, M., Berumen, M. L., Bigot, L., … Mouillot, D. (2019). Social-environmental drivers inform strategic management of coral reefs in the Anthropocene. Nature Ecology & Evolution, 3(9), 1341–1350.
Fox, M. D., Carter, A. L., Edwards, C. B., Takeshita, Y., Johnson, M. D., Petrovic, V., Amir, C. G., Sala, E., Sandin, S. A., & Smith, J. E. (2019). Limited coral mortality following acute thermal stress and widespread bleaching on Palmyra Atoll, central Pacific. Coral Reefs, 38(4), 701–712.
Lewis, L. S., & Smith, J. E. (2019). Functional diversity among herbivorous sea urchins on a coral reef: grazing rate, dietary preference, and metabolism. Marine Ecology Progress Series, 625, 71–87.
Kelly, L. W., Nelson, C. E., Haas, A. F., Naliboff, D. S., Calhoun, S., Carlson, C. A., Edwards, R. A., Fox, M. D., Hatay, M., Johnson, M. D., Kelly, E. L. A., Lim, Y. W., Macherla, S., Quinlan, Z. A., Silva, G. G. Z., Vermeij, M. J. A., Zgliczynski, B., Sandin, S. A., Smith, J. E., & Rohwer, F. (2019). Diel population and functional synchrony of microbial communities on coral reefs. Nature Communications, 10.
Fox, M. D., Williams, G. J., Johnson, M. D., Radice, V. Z., Zgliczynski, B. J., Kelly, E. L. A., Rohwer, F. L., Sandin, S. A., & Smith, J. E. (2018). Gradients in primary production predict trophic strategies of mixotrophic corals across spatial scales. Current Biology, 28(21), 3355-+.
d’Auriac, I. G., Quinn, R. A., Maughan, H., Nothias, L. F., Little, M., Kapono, C. A., Cobian, A., Reyes, B. T., Green, K., Quistad, S. D., Leray, M., Smith, J. E., Dorrestein, P. C., Rohwer, F., Deheyn, D. D., & Hartmann, A. C. (2018). Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism. Proceedings of the Royal Society B-Biological Sciences, 285(2884).
Nakajima, R., Haas, A. F., Silveira, C. B., Kelly, E. L. A., Smith, J. E., Sandin, S., Kelly, L. W., Rohwer, F., Nakatomi, N., & Kurihara, H. (2018). Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. Journal of Experimental Marine Biology and Ecology, 504, 53–60.
Williams, G. J., Sandin, S. A., Zgliczynski, B. J., Fox, M. D., Gove, J. M., Rogers, J. S., Furby, K. A., Hartmann, A. C., Caldwell, Z. R., Price, N. N., & Smith, J. E. (2018). Biophysical drivers of coral trophic depth zonation. Marine Biology, 165(4).
Ruttenberg, B., Caselle, J. E., Estep, A. J., Johnson, A. E., Marhaver, K. L., Richter, L. J., Sandin, S. A., Vermeij, M. J. A., Smith, J. E., Grenda, D., & Cannon, A. (2018). Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management. PLOS ONE, 13(1).
Lewis, L. S., Smith, J. E., & Eynaud, Y. (2018). Comparative metabolic ecology of tropical herbivorous echinoids on a coral reef. PLOS ONE, 13(1).
Edwards, C. B., Eynaud, Y., Williams, G. J., Pedersen, N. E., Zgliczynski, B. J., Gleason, A. C. R., Smith, J. E., & Sandin, S. A. (2017). Large-area imaging reveals biologically driven non-random spatial patterns of corals at a remote reef. Coral Reefs, 36(4), 1291–1305.
Johnson, M. D., Comeau, S., Lantz, C. A., & Smith, J. E. (2017). Complex and interactive effects of ocean acidification and temperature on epilithic and endolithic coral-reef turf algal assemblages. Coral Reefs, 36(4), 1059–1070.
Kersten, R. D., Lee, S., Fujita, D., Pluskal, T., Kram, S., Smith, J. E., Iwai, T., Noel, J. P., Fujita, M., & Weng, J. K. (2017). A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-Scale NMR-Coupled Crystalline Sponge X-ray Diffraction Analysis. Journal of the American Chemical Society, 139(46), 16838–16844.
Kelly, E. L. A., Eynaud, Y., Williams, I. D., Sparks, R. T., Dailer, M. L., Sandin, S. A., & Smith, J. E. (2017). A budget of algal production and consumption by herbivorous fish in an herbivore fisheries management area, Maui, Hawaii. Ecosphere, 8(8).
Nakajima, R., Yamazaki, H., Lewis, L. S., Khen, A., Smith, J. E., Nakatomi, N., & Kurihara, H. (2017). Planktonic trophic structure in a coral reef ecosystem - Grazing versus microbial food webs and the production of mesozooplankton. Progress in Oceanography, 156, 104–120.
Furby, K. A., Smith, J. E., & Sandin, S. A. (2017). Porites superfusa mortality and recovery from a bleaching event at Palmyra Atoll USA. PeerJ, 5.
McLaughlin, K., Dickson, A., Weisberg, S. B., Coale, K., Elrod, V., Hunter, C., Johnson, K. S., Kram, S., Kudela, R., Martz, T., Negrey, K., Passow, U., Shaughnessy, F., Smith, J. E., Tadesse, D., Washburn, L., & Weis, K. R. (2017). An evaluation of ISFET sensors for coastal pH monitoring applications. Regional Studies in Marine Science, 12, 11–18.
Kelly, E. L. A., Eynaud, Y., Clements, S. M., Gleason, M., Sparks, R. T., Williams, I. D., & Smith, J. E. (2016). Investigating functional redundancy versus complementarity in Hawaiian herbivorous coral reef fishes. Oecologia, 182(4), 1151–1163.
Takeshita, Y., McGillis, W., Briggs, E. M., Carter, A. L., Donham, E. M., Martz, T. R., Price, N. N., & Smith, J. E. (2016). Assessment of net community production and calcification of a coral reef using a boundary layer approach. Journal of Geophysical Research-Oceans, 121(8), 5655–5671.
Mullen, A. D., Treibitz, T., Roberts, P. L. D., Kelly, E. L. A., Horwitz, R., Smith, J. E., & Jaffe, J. S. (2016). Underwater microscopy for in situ studies of benthic ecosystems. Nature Communications, 7.
Haas, A. F., Fairoz, M. F. M., Kelly, L. W., Nelson, C. E., Dinsdale, E. A., Edwards, R. A., Giles, S., Hatay, M., Hisakawa, N., Knowles, B., Lim, Y. W., Maughan, H., Pantos, O., Roach, T. N. F., Sanchez, S. E., Silveira, C. B., Sandin, S., Smith, J. E., & Rohwer, F. (2016). Global microbialization of coral reefs. Nature Microbiology, 1(6).
Kaplanis, N. J., Harris, J. L., & Smith, J. E. (2016). Distribution patterns of the non-native seaweeds Sargassum horneri (Turner) C. Agardh and Undaria pinnatifida (Harvey) Suringar on the San Diego and Pacific coast of North America. Aquatic Invasions, 11(2), 111–124.
Quinn, R. A., Vermeij, M. J. A., Hartmann, A. C., d’Auriac, I. G., Benler, S., Haas, A., Quistad, S. D., Lim, Y. W., Little, M., Sandin, S., Smith, J. E., Dorrestein, P. C., & Rohwer, F. (2016). Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence. Proceedings of the Royal Society B-Biological Sciences, 283(1829).
Knowles, B., Silveira, C. B., Bailey, B. A., Barott, K., Cantu, V. A., Cobian-Guemes, A. G., Coutinho, F. H., Dinsdale, E. A., Felts, B., Furby, K. A., George, E. E., Green, K. T., Gregoracci, G. B., Haas, A. F., Haggerty, J. M., Hester, E. R., Hisakawa, N., Kelly, L. W., Lim, Y. W., … Rohwer, F. (2016). Lytic to temperate switching of viral communities. Nature, 531(7595), 466-+.
Smith, J. E., Brainard, R., Carter, A., Grillo, S., Edwards, C., Harris, J., Lewis, L., Obura, D., Rohwer, F., Sala, E., Vroom, P. S., & Sandin, S. (2016). Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific. Proceedings of the Royal Society B-Biological Sciences, 283(1822).
Vargas-Angel, B., Richards, C. L., Vroom, P. S., Price, N. N., Schils, T., Young, C. W., Smith, J., Johnson, M. D., & Brainard, R. E. (2015). Baseline assessment of net calcium carbonate accretion rates on US Pacific reefs. PLOS ONE, 10(12).
Haas, A. F., Guibert, M., Foerschner, A., Co, T., Calhoun, S., George, E., Hatay, M., Dinsdale, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Felts, B., Dustan, P., Salamon, P., & Rohwer, F. (2015). Can we measure beauty? Computational evaluation of coral reef aesthetics. PeerJ, 3.
Takeshita, Y., Frieder, C. A., Martz, T. R., Ballard, J. R., Feely, R. A., Kram, S., Nam, S., Navarro, M. O., Price, N. N., & Smith, J. E. (2015). Including high-frequency variability in coastal ocean acidification projections. Biogeosciences, 12(19), 5853–5870.
Beijbom, O., Edmunds, P. J., Roelfsema, C., Smith, J., Kline, D. I., Neal, B. P., Dunlap, M. J., Moriarty, V., Fan, T. Y., Tan, C. J., Chan, S., Treibitz, T., Gamst, A., Mitchell, B. G., & Kriegman, D. (2015). Towards automated annotation of benthic survey images: Variability of human experts and operational modes of automation. PLOS ONE, 10(7).
Harris, J. L., Lewis, L. S., & Smith, J. E. (2015). Quantifying scales of spatial variability in algal turf assemblages on coral reefs. Marine Ecology Progress Series, 532, 41–57.
Bracken, M. E. S., Hillebrand, H., Borer, E. T., Seabloom, E. W., Cebrian, J., Cleland, E. E., Elser, J. J., Gruner, D. S., Harpole, W. S., Ngai, J. T., & Smith, J. E. (2015). Signatures of nutrient limitation and co-limitation: responses of autotroph internal nutrient concentrations to nitrogen and phosphorus additions. Oikos, 124(2), 113–121.
Lim, Y. W., Cuevas, D. A., Silva, G. G. Z., Aguinaldo, K., Dinsdale, E. A., Haas, A. F., Hatay, M., Sanchez, S. E., Wegley-Kelly, L., Dutilh, B. E., Harkins, T. T., Lee, C. C., Tom, W., Sandin, S. A., Smith, J. E., Zgliczynski, B., Vermeij, M. J. A., Rohwer, F., & Edwards, R. A. (2014). Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. PeerJ, 2.